Intro to R and RStudio for Genomics: All Images

Beta

Intro to R and RStudio for Genomics

Introducing R and RStudio IDE

Figure 1

rstudio default session

Figure 2

rstudio default session

Figure 3

rstudio default session

Figure 4

rstudio default session

Figure 5

rstudio default session

Figure 6

rstudio default session

R Basics

Figure 1

rstudio script warning

Introduction to the example dataset and file type

Figure 1

variant calling workflow. Sequence reads (FASTQ files), Quality control (FASTQ files), Alignment to Genome (SAM/BAM files), Alignment cleanup (BAM file ready for variant calling), Variant Calling (VCF file)

R Basics continued - factors and data frames

Figure 1

RStudio data frame view

Figure 2

Figure 3

Figure 4

RStudio import menu

Figure 5

RStudio import screen

Using packages from Bioconductor

Figure 1

screenshot of bioconductor homepage

Figure 2

screenshot of bioconductor search

Data Wrangling and Analyses with Tidyverse

Figure 1

rstudio default session

Data Visualization with ggplot2

Figure 1

Figure 2

Figure 3

Figure 4

Figure 5

Figure 6

Figure 7

Figure 8

Figure 9

Figure 10

Figure 11

Figure 12

Figure 13

Figure 14

Figure 15

Figure 16

Figure 17

Figure 18

Figure 19

Getting help with R

Figure 1

rstudio default session